Microbio Unit 2 Exam

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what’s a virus classified as?

obligate intracellular PARASITE

  • HOST + cell type specific

<p>obligate intracellular PARASITE</p><ul><li><p>HOST + cell type specific</p></li></ul>
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what’s a virion?

infectious particle that viruses package into! to TRANSMIT to next cell/org!

<p>infectious particle that viruses package into! to TRANSMIT to next cell/org! </p>
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what are the parts of a virion?

viral DNA/RNA genome

capsomeres

<p>viral DNA/RNA genome </p><p>capsomeres </p>
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what’s a nucleocapsid?

capid + genome

<p>capid + genome </p>
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what does the virion genome look like?

  • DNA/RNA

  • single/double stranded

  • together/ in parts

<ul><li><p>DNA/RNA </p></li><li><p>single/double stranded</p></li><li><p>together/ in parts</p></li></ul>
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what are the two packaged types of virus?

  • naked = JUST capsid (made of capsomeres)

  • enveloped = host membrane envelope on the outside w/ GLYCOPROTEINS from host

<ul><li><p>naked = JUST capsid (made of capsomeres) </p></li><li><p>enveloped = host membrane envelope on the outside w/ GLYCOPROTEINS from host </p></li></ul>
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what’s the “4 steps” in the hierarchy of virus classification?

family (viridae), subfamily (virinae), genus (virus), species

<p>family (viridae), subfamily (virinae), genus (virus), species </p>
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what are the 3 ways that a virus differs from a cell?

  1. SINGLE type of genetic material (DNA OR RNA)

  2. don’t have genes to make energy / proteins → HIJACK host cell

  3. synthesize + ASSEMBLE components, do NOT grow + divide

<ol><li><p>SINGLE type of genetic material (DNA OR RNA)</p></li><li><p>don’t have genes to make energy / proteins → HIJACK host cell</p></li><li><p>synthesize + ASSEMBLE components, do NOT grow + divide</p></li></ol>
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what are the 6 steps of the infectious cycle?

  1. attach

  2. penetrate

  3. uncoat

  4. synthesize (pro’s)

  5. assemble

  6. release

<ol><li><p>attach </p></li><li><p>penetrate </p></li><li><p>uncoat </p></li><li><p>synthesize (pro’s) </p></li><li><p>assemble </p></li><li><p>release </p></li></ol>
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what part of the virus determines which types of cells it can infect?

spike glycoproteins!

<p>spike glycoproteins! </p>
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what is the “host range”?

what’s it DETERMINED by?

the RANGE of host org’s that a particular virus species INFECTS

  • determined by HOST cell’s receptor proteins

  • viruses r pretty choosy, so the range is usually small.

<p>the RANGE of host org’s that a particular virus species INFECTS </p><ul><li><p>determined by HOST cell’s receptor proteins </p></li><li><p>viruses r pretty choosy, so the range is usually small. </p></li></ul>
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what is “cell trophism”?

virus’ preference for infecting a SPECIFIC cell type

  • ie HIV virus likes T cells.

<p>virus’ preference for infecting a SPECIFIC cell type</p><ul><li><p>ie HIV virus likes T cells.  </p></li></ul>
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what do viruses convert their genomes into? why?

  • CONVERT virus genome into mRNA

  • so host RIBOSOMES can translate them!

<ul><li><p>CONVERT virus genome into mRNA </p></li><li><p>so host RIBOSOMES can translate them! </p></li></ul>
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what are viral genomes copied by?

  • HOST cell polymerase

  • (sometimes by VIRAL polymerase)

<ul><li><p>HOST cell polymerase </p></li><li><p>(sometimes by VIRAL polymerase) </p></li></ul>
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can a host cell translate (-) ssRNA?

NOPE.

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what is (+) ssRNA?

aka?

host cell CAN directly translate.

sense RNA & messenger RNA

<p>host cell CAN directly translate.</p><p>sense RNA &amp; messenger RNA </p>
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what’s (-) ssRNA? aka?

antisense RNA

(literally just complimentary to (+) ssRNA)

<p>antisense RNA </p><p>(literally just complimentary to (+) ssRNA) </p>
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how is DNA translated?

IT’S NOT.

must be transCRIBED into (+) ssRNA first

<p>IT’S NOT. </p><p>must be transCRIBED into (+) ssRNA first </p>
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for a virus to replicate, what does it need to do?

  1. make PROTEINS

  2. REPLICATE genome

<ol><li><p>make PROTEINS </p></li><li><p>REPLICATE genome </p></li></ol>
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if RNA poly reads (+) ssRNA, what does it make?

  • (-) ssRNA!

<ul><li><p>(-) ssRNA! </p></li></ul>
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if DNA poly reads (+) ssRNA, what does it make?

(-) ss DNA

<p>(-) ss DNA </p>
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what do polymerases do?

make COMPLEMENTARY strand to TEMPLATE strand

<p>make COMPLEMENTARY strand to TEMPLATE strand </p>
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what do human RNA poly’s do?

use DNA template to make (+) ss RNA

<p>use DNA template to make (+) ss RNA</p>
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what do human ribosomes translate?

(+) ss RNA into PROTEINS

<p>(+) ss RNA into PROTEINS </p>
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wtf does the virus do with (+) ss RNA

host ribosomes can translate directly

OR viral RNA poly turns it into (-) ss RNA

  • to make TONS of (+) ss RNA

<p>host ribosomes can translate directly </p><p>OR viral RNA poly turns it into (-) ss RNA </p><ul><li><p>to make TONS of (+) ss RNA </p></li></ul>
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wtf does a virus do with (-) ss RNA

viral RNA poly turn it into (+) ss RNA

→ human ribosomes translate it

  • can also make TONS of (+) ss RNA

<p>viral RNA poly turn it into (+) ss RNA </p><p>→ human ribosomes translate it </p><ul><li><p>can also make TONS of (+) ss RNA </p></li></ul>
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<p>fill in the arrows AND boxes </p>

fill in the arrows AND boxes

(-) single stranded goes thro VIRAL rna poly into (+) ssRNA → protein

double stranded RNA - viral RNA poly —> (+) ssRNA → protein

<p>(-) single stranded goes thro VIRAL rna poly into (+) ssRNA → protein </p><p>double stranded RNA - viral RNA poly —&gt; (+) ssRNA → protein </p>
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what does human DNA poly do?

uses DNA template

makes COMPLEMENTARY DNA strand

<p>uses DNA template </p><p>makes COMPLEMENTARY DNA strand </p>
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human RNA poly…

uses DNA template

makes (+) strand of RNA

<p>uses DNA template </p><p>makes (+) strand of RNA </p>
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(+) RNA …

TRANSLATED by human ribo’s into proteins

<p>TRANSLATED by human ribo’s into proteins </p>
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what’s special ab DNA viruses?

can use HOST enzymes to make proteins.

<p>can use HOST enzymes to make proteins. </p>
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<p>what do DNA viruses do to double stranded DNA? </p>

what do DNA viruses do to double stranded DNA?

tscribe into (+) ss RNA → protein

<p>tscribe into (+) ss RNA → protein </p>
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<p>what do DNA viruses do to ss (-) RNA? </p>

what do DNA viruses do to ss (-) RNA?

turn into DOUBLE STRANDED DNA → ss (+) RNA → protein

<p>turn into DOUBLE STRANDED DNA → ss (+) RNA → protein </p>
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<p>what do DNA viruses do to ss (+) DNA?</p>

what do DNA viruses do to ss (+) DNA?

turn into DOUBLE stranded DNA → ss (+) RNA → protein

<p>turn into DOUBLE stranded DNA → ss (+) RNA → protein </p>
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what type of genome do retroviruses have?

what intermediate do they use?

have (+) ss RNA genomes

use DNA intermediate to replicate

<p>have (+) ss RNA genomes </p><p>use DNA intermediate to replicate </p>
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<p>fill in the blank </p>

fill in the blank

knowt flashcard image
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why are there so few antiviral drugs available?

  1. viruses REPLICATE in human cells → could damage human cells

  1. viruses r hella simple → what do the drugs even target?

<ol><li><p>viruses REPLICATE in human cells → could damage human cells </p></li></ol><ol start="2"><li><p>viruses r hella simple → what do the drugs even target? </p></li></ol>
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how do viruses assemble?

new components hop into PROGENY virions that later get released

<p>new components hop into PROGENY virions that later get released </p>
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how do enveloped and nonenveloped viruses release?

non-envelope → cell lysis

envelope → budding off (take host cell mem with them!)

<p>non-envelope → cell lysis </p><p>envelope → budding off (take host cell mem with them!) </p>
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what happens in an abortive infection?

viruses just sit there in the host cell, no offpsirng are made

<p>viruses just sit there in the host cell, no offpsirng are made </p>
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what happens in a chronic infection?

virus infects host cell, makes babies, but DOESN’T kill host cell until it’s time

<p>virus infects host cell, makes babies, but DOESN’T kill host cell until <em>it’s time</em> </p>
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what happens in an lytic, acute infection?

the host cell dies and the babies are released

<p>the host cell dies and the babies are released </p>
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what are the 2 pathways that happen to the virus/ host cell in the latent state?

  1. INTEGRATE in host cell genome

  2. stays as CLOSED circular episomes on the side of the cell

    • which can later be activated…. ooooo

<ol><li><p>INTEGRATE in host cell genome </p></li><li><p>stays as CLOSED circular episomes on the side of the cell </p><ul><li><p>which can later be activated…. ooooo </p></li></ul></li></ol>
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what are the 2 types of testing can you use to detect viral infections?

what do they really detect?

ELISA, serological tests (COVID rapid)

  • detect antigens/ antibodies

MOLECULAR tests (PCR)

  • genomic SEQUENCES + PROTEINS

<p>ELISA, serological tests (COVID rapid) </p><ul><li><p>detect antigens/ antibodies </p></li></ul><p>MOLECULAR tests (PCR) </p><ul><li><p>genomic SEQUENCES + PROTEINS </p></li></ul>
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what are 2 NON testing ways to detect a viral infection?

what’s the limitation of the second?

  1. symptoms of infection

  2. cultiVATE virus + look for cytopathic effects (damage to cells)

    • canNOT grow on agar

<ol><li><p>symptoms of infection </p></li><li><p>cultiVATE virus + look for cytopathic effects (damage to cells) </p><ul><li><p>canNOT grow on agar </p></li></ul></li></ol>
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wtf are prions?

what is their genome?

how do they do bad things?

infectious proteins

  • NO nucleic acids

  • make INSOLUABLE fibril aggregates (clumps)

<p>infectious proteins </p><ul><li><p>NO nucleic acids </p></li><li><p>make INSOLUABLE fibril aggregates (clumps) </p></li></ul>
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what happens in transmissible spongiform encephalopathies?

what are the symptoms?

the prion clumps make HOLES in brain tissue

  • lose coordination, bad memory, coma, death

<p>the prion clumps make HOLES in brain tissue </p><ul><li><p>lose coordination, bad memory, coma, death </p></li></ul>
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what is BSE/ mad cow disease, chronic wasting disease, scrapie sheep, vJCD (variant Jakob disease)

transmissible spongiform encephalitis (prion disease)

<p>transmissible spongiform encephalitis (prion disease) </p>
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what are the 2 types of folded prions?

PRP-C: normal cellular prion on cell surface

PRP-SC: SCrapie, misfolded → accumulates in brain cells to make plaques, dangerous

<p>PRP-C: normal cellular prion on cell surface </p><p>PRP-SC: SCrapie, misfolded → accumulates in brain cells to make plaques, dangerous </p>
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how do prions reproduce?

MISFOLDED PRP-SC prions misfold other proteins into the infectious form.

<p>MISFOLDED PRP-SC prions misfold other proteins into the infectious form. </p>
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what eukaryotic orgs are multicellular EXCEPT at reproductive stages?

why is this significant?

helminthes = parasitic worms (the eggs + larva are unicellular)

  • diagnose whether someone has parasitic infection based on whether u can see the eggs!!

<p><strong>helminthes </strong>= parasitic worms (the eggs + larva are unicellular) </p><ul><li><p>diagnose whether someone has parasitic infection based on whether u can see the eggs!! </p></li></ul>
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what eukarytoic microbes are ALWAYS unicellular?

protozoa (parasites)

<p>protozoa (parasites) </p>
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what eukaryotic microbes can be unicellular OR multicellular?

fungi!

<p>fungi! </p>
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what’s the unique feature about eukaryotic cells?

they have a NUCLEUS!

<p>they have a NUCLEUS! </p>
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fungi are eukary/prokary?

aerobic/ anaerobic?

size compared to bacteria?

motile?

eukary

majority OBLIGATE aerobes, some facultative aerobes (aka WANT o2)

LARGER than bacteria

NON-motile bc no flagella.

<p>eukary </p><p>majority OBLIGATE aerobes, some facultative aerobes (aka WANT o2) </p><p>LARGER than bacteria </p><p>NON-motile bc no flagella. </p>
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what is special about the fungi cell structure?

have CELL WALL.

<p>have CELL WALL. </p>
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what is the distinguising component of the fungal cell membrane?

ergosterol (fatty acid)

<p>ergosterol (fatty acid) </p>
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what are the 3 components of the fungal cell wall?

  1. B glycans

  1. mannoproteins

  2. chitin!

<ol><li><p>B glycans </p></li></ol><ol start="2"><li><p>mannoproteins </p></li><li><p>chitin! </p></li></ol>
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what’s fancy about B glycans and mannoproteins?

they make up the exoskeleton of crabs + arthropods.

<p>they make up the exoskeleton of crabs + arthropods. </p>
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what are some properties of chitin? why? what is it found in?

found in fungi cell WALLS.

tough, rigid, strong bc H bonds.

<p>found in fungi cell WALLS. </p><p>tough, rigid, strong bc H bonds. </p>
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what are the 2 types of fungi? and some examples of each?

  1. macroscopic: mushroom, puffball, gill

  2. MICROscopic: molds, yeasts

<ol><li><p>macroscopic: mushroom, puffball, gill </p></li><li><p>MICROscopic: molds, yeasts </p></li></ol>
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what types of environments are fungi found in?

found in soil or water w/ ORGANIC MATTER

(gotta eat somehow)

<p>found in soil or water w/ ORGANIC MATTER </p><p>(gotta eat somehow) </p>
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<p>how do yeast vs mold look on incubating plates? </p>

how do yeast vs mold look on incubating plates?

yeasts (unicell) = round, pasty (doughy), mucoid colonies

MOLD (multicel) = hairy, wooly, fuzzy

<p>yeasts (unicell) = round, pasty (doughy), mucoid colonies </p><p>MOLD (multicel) = hairy, wooly, fuzzy </p>
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are yeasts round/linear?

how do they move around?

round

NONmotile!!

<p>round</p><p>NONmotile!! </p>
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how do yeasts reproduce?

ASEXUAL reprod

budd off to form CONIDIA

<p>ASEXUAL reprod</p><p>budd off to form CONIDIA </p>
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how do hyphae reproduce?

asexual AND sexual

<p>asexual AND sexual </p>
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most fungi are…

MULTICELLULAR molds

(versus single cellular yeasts)

<p>MULTICELLULAR molds </p><p>(versus single cellular yeasts) </p>
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what are the cells of MULTICELLULAR mold called? how are they shaped?

LONG filamentous cells called HYPHAE

(responsible for how hairy mold is)

<p>LONG filamentous cells called HYPHAE </p><p>(responsible for how hairy mold is) </p>
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what types of fungi are motile?

PLOT TWIST.

neither yeasts NOR hyphae molds are motile.

<p>PLOT TWIST. </p><p>neither yeasts NOR hyphae molds are motile. </p>
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wtf are mycelium? what is their texture like?

a MASS of hyphae

hairy, cottony, velvety

<p>a MASS of hyphae </p><p>hairy, cottony, velvety </p>
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how do multicellular molds grow?

spore grows a FILAMENT, turns into a hypha, and BAM a mass of hypha together = mycelium.

<p>spore grows a FILAMENT, turns into a hypha, and BAM a mass of hypha together = mycelium. </p>
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how do molds “eat” in order to grow?

secrete CATABOLIC ENZYMES to absorb nutrients from their environment

<p>secrete CATABOLIC ENZYMES to absorb nutrients from their environment</p>
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how do molds reproduce?

release BILLIONS of spores that reproduce sexually or asexually!

(long version: spore lands, grows into germ tube, makes submerged + surface hyphae into a mycelium clump, release more spores!)

<p>release BILLIONS of spores that reproduce sexually or asexually! </p><p>(long version: spore lands, grows into germ tube, makes submerged + surface hyphae into a mycelium clump, release more spores!)  </p>
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wtf is thermal dimorphism in the context of molds?

cold temp = mold

warm temp = turn into YEAST.

basically the environment differentiates the fungi into either yeast or mold.

<p>cold temp = mold </p><p>warm temp = turn into YEAST. </p><p>basically the environment differentiates the fungi into either yeast or mold. </p>
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wtf is a mycose?

human FUNGAL disease

<p>human FUNGAL disease </p>
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how common is it for mycoses to move from human to human?

NOT common.

<p>NOT common.</p><p></p><p></p>
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what are the 2 most common human mycoses and what are they caused by?

MYCOSES (fungi disease)

dermatophytes = toenail fungus

candida albicans = yeast infections

<p>MYCOSES (fungi disease) </p><p>dermatophytes = toenail fungus </p><p>candida albicans = yeast infections </p>
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how are most individual cases of human mycoses commonly happen?

INHALATION

trauma to SKIN.

<p>INHALATION </p><p>trauma to SKIN. </p>
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how do most MASS cases of human mycoses commonly happen?

mass exposure due to ENVIRONMENTAL conditions (ie construction site)

<p>mass exposure due to ENVIRONMENTAL conditions (ie construction site) </p>
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what does it mean for a fungi to be a “true pathogen”? how common is this?

VERY rare.

they have to actively ATTACK and INVADE non-compromised tissues

<p>VERY rare. </p><p>they have to actively ATTACK and INVADE non-compromised tissues </p>
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in what cases will an opportunistic fungi attack?

COMPROMISED immune sys

fungi ACCIDENTALLY contaminates sterile tissues ie IV, sugery

<p>COMPROMISED immune sys </p><p>fungi ACCIDENTALLY contaminates sterile tissues ie IV, sugery </p>
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<p>how do true fungal pathogens cause lung infections? </p>

how do true fungal pathogens cause lung infections?

airborne spores are INHALED then spread to other organs.

  • ie CNS, skin, lymph nodes

<p>airborne spores are INHALED then spread to other organs. </p><ul><li><p>ie CNS, skin, lymph nodes </p></li></ul>
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what are 3 ways that we identify fungi?

ISOLATE on a media

molecular (PCR) to detect genomic sequences

microscope hehe

<p>ISOLATE on a media</p><p>molecular (PCR) to detect genomic sequences </p><p>microscope hehe </p><p></p>
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how do parasites get into the body?

they are EXOGENOUS = must come from OUTSIDE the body

  • ingestion (soil, water, food)

  • penetration (MOSQUITO)

<p>they are EXOGENOUS = must come from OUTSIDE the body </p><ul><li><p>ingestion (soil, water, food) </p></li><li><p>penetration (MOSQUITO) </p></li></ul>
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why don’t we have a lot of anti-parasitic drugs?

they have TONS of side effects

<p>they have TONS of side effects</p>
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what is the parasitic cell covering made of?

ONLY cell membrane, NOT cell wall.

<p>ONLY cell membrane, NOT cell wall. </p>
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what’s the difference between protozoa + helminthes? (hint: 3 things)

prot: single cell, smaller (microscopic), CYST FORM = less metabolically active

helm: multicell, larger (some have ORGANS), lay EGGS

<p>prot: single cell, smaller (microscopic), CYST FORM = less metabolically active </p><p>helm: multicell, larger (some have ORGANS), lay EGGS </p>
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what is the outer coating of protozoan cells?

are they motile?

NO cell walls?

YES motile. have cilia + flagella + pseudopodia

<p>NO cell walls? </p><p>YES motile. have cilia + flagella + pseudopodia </p>
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how do protozoans affect human bodies?

  1. infect intestinal / urogenital

  2. infect blood cells + tissues

<ol><li><p>infect intestinal / urogenital </p></li><li><p>infect blood cells + tissues </p></li></ol>
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in protozoan reproduction, what is the first stage called? what does it do? where does it exist?

  1. trophozoite: MOTILE in the host, eat + reproduce

<ol><li><p>trophozoite: MOTILE in the host, eat + reproduce </p></li></ol>
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what is the dormant resting stage of the protozoan reproduction? when does it kick in?

CYST stage. during bad weather!

IMmotile, NOT replicating, resistant AF, usually OUTSIDE the body

<p>CYST stage. during bad weather!</p><p>IMmotile, NOT replicating, resistant AF, usually OUTSIDE the body </p>
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what processes are apart of the excystment and encystment? which is inside the body, and which is NOT?

excystment = INSIDE human body (cyst turns into ACTIVE trophozoite)

eNcystment = OUTSIDE human body (active trophozoite hybernates into dormant cyst)

<p>excystment = INSIDE human body (cyst turns into ACTIVE trophozoite) </p><p>eNcystment = OUTSIDE human body (active trophozoite hybernates into dormant cyst) </p>
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how do helminthes damage human hosts?

ROB host of nutrients → weakness + disease

<p>ROB host of nutrients → weakness + disease </p>
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where are helminthes most commonly found?

developING countries

<p>developING countries </p><p></p>
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how are helminthes commonly aquired?

ingestion of larvae or eggs in FOOD

soil/water

insect vectors (rare)

<p>ingestion of larvae or eggs in FOOD</p><p>soil/water </p><p>insect vectors (rare) </p>
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what’s the most common worm infection in the US? how about in the rest of the world?

US = enterobius (~300 mil)

the world = ascaris (~800 mil)

<p>US = enterobius (~300 mil) </p><p>the world = ascaris (~800 mil) </p><p></p>
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how do we usually identify helminthes?

MICROSCOPE.

look for eggs, worms, or larvae in:

  • blood, poop, sputum, biopsies

<p>MICROSCOPE. </p><p>look for eggs, worms, or larvae in: </p><ul><li><p>blood, poop, sputum, biopsies </p></li></ul>